https://github.com/bionumpy/bionumpy-notebooks
Jupyter notebooks with small BioNumPy examples
https://github.com/bionumpy/bionumpy-notebooks
Last synced: 11 months ago
JSON representation
Jupyter notebooks with small BioNumPy examples
- Host: GitHub
- URL: https://github.com/bionumpy/bionumpy-notebooks
- Owner: bionumpy
- Created: 2023-01-06T12:07:35.000Z (about 3 years ago)
- Default Branch: master
- Last Pushed: 2024-04-30T11:50:49.000Z (over 1 year ago)
- Last Synced: 2025-01-06T10:32:30.181Z (about 1 year ago)
- Language: Jupyter Notebook
- Size: 1.28 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: Readme.md
Awesome Lists containing this project
README
# BioNumPy notebooks
This repository contains jupyter notebooks for basic BioNumPy examples:
* [FASTQ filtering](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/fastq_filtering.ipynb)
* [Motif matching](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/motif_matching.ipynb)
* [Plot mean base qualities across reads](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/plot_mean_base_quality_across_reads.ipynb)
* [Sequence matching](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/sequence_matching.ipynb)
* [Kmers](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/kmers.ipynb)
* [Genomic data](https://colab.research.google.com/github/bionumpy/bionumpy-notebooks/blob/master/genomic_data_examples.ipynb)
* [Example usecase of ML on biological sequence data enabled by BioNumpy](https://colab.research.google.com/drive/1qQTUY_Iq3rybi9u-NrL79wQmQZFyqJzK?usp=sharing)