https://github.com/borgwardtlab/proteinshake_release
https://github.com/borgwardtlab/proteinshake_release
Last synced: about 1 month ago
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- Host: GitHub
- URL: https://github.com/borgwardtlab/proteinshake_release
- Owner: BorgwardtLab
- License: gpl-3.0
- Created: 2023-01-04T17:27:05.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2023-06-21T19:45:02.000Z (almost 3 years ago)
- Last Synced: 2026-01-03T12:22:18.299Z (5 months ago)
- Language: Python
- Size: 1010 KB
- Stars: 2
- Watchers: 2
- Forks: 1
- Open Issues: 6
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
This repository contains the code for releasing proteinshake datasets. It also computes the random, sequence, and structure splits.
To release, install `proteinshake`, `foldseek`, and `cd-hit`:
- https://github.com/BorgwardtLab/proteinshake
- https://github.com/steineggerlab/foldseek
- https://github.com/weizhongli/cdhit
Adjust the `TAG`, `SCRATCH`, `DESTINATION`, `NJOBS` variables in `release.py` according to your system.
Then run: `python release.py`
Note that this repository is licensed under GPLv3, due to dependency licenses.