https://github.com/boxed/relatedhow

A website to quickly find out how species are related
https://github.com/boxed/relatedhow

Last synced: about 1 month ago
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A website to quickly find out how species are related

• Host: GitHub
• URL: https://github.com/boxed/relatedhow
• Owner: boxed
• License: bsd-3-clause
• Created: 2018-01-11T09:18:45.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2023-12-02T11:11:30.000Z (about 1 year ago)
• Last Synced: 2024-10-09T00:44:13.876Z (3 months ago)
• Language: Python
• Homepage: https://relatedhow.kodare.com
• Size: 315 KB
• Stars: 4
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Related how?

Once you've set this app up and imported and processed the data you can use the command line to get a tree for a bunch of species:

```

> python related_how_graph.py "Homo sapiens" "Pan troglodytes" "Gorilla gorilla" "Canis lupus" "Capra aegagrus hircus" "Equus ferus caballus" "Bos taurus" "Felis silvestris catus" "Tachyglossidae"

```

![Image of relationship between several species](example.svg)

# Setup

1. Set up a database. By default this app is configured to mysql on localhost with default username/password.

2. run `import_and_process.py`. This will take a long while, so keep calm!

3. run `fix_ambigious_parents.py` a few times until it only gives you warnings, and not any lines that look like " 12 -> 13"