https://github.com/brainstorm/htsget-indexer

htsget Rust indexer (from BAM to {CSV, JSON, DB})
https://github.com/brainstorm/htsget-indexer

bam bioinformatics htsget indexing

Last synced: 6 months ago
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htsget Rust indexer (from BAM to {CSV, JSON, DB})

• Host: GitHub
• URL: https://github.com/brainstorm/htsget-indexer
• Owner: brainstorm
• Created: 2019-11-12T10:56:21.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2019-12-03T09:16:32.000Z (almost 6 years ago)
• Last Synced: 2025-02-08T15:25:15.272Z (8 months ago)
• Topics: bam, bioinformatics, htsget, indexing
• Language: Rust
• Homepage:
• Size: 4.56 MB
• Stars: 0
• Watchers: 6
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
## htsget Rust indexer

To generate an index in CSV format:

```sh

cargo run --features csv

``` 

To generate an index in JSON format:

```sh

cargo run --features json

```