https://github.com/brendan-rius/bioinformatics
Quick ugly bioinformatics scripts in Python I wrote while learning about bioinformatics
https://github.com/brendan-rius/bioinformatics
Last synced: 15 days ago
JSON representation
Quick ugly bioinformatics scripts in Python I wrote while learning about bioinformatics
- Host: GitHub
- URL: https://github.com/brendan-rius/bioinformatics
- Owner: brendan-rius
- Created: 2015-12-30T12:00:02.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2016-01-19T14:45:06.000Z (over 9 years ago)
- Last Synced: 2025-03-29T08:11:12.493Z (about 1 month ago)
- Language: Python
- Size: 2.92 MB
- Stars: 5
- Watchers: 2
- Forks: 4
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Bioinformatics toolbox
This repository contains Python script I wrote while leraning about bioinformatics.
These scripts are ofter ugly and not optimized, because just written as POC or for quick testing.
## Conventions
+ The sequences are uppercase (`ACGT`, not `acgt`).
+ When talking about nucleotides, the order will always be `A`, `C`, `G` , `T` (alphabetical order).
For example, when there is an array of size 4 (one for each nucleotide), the first element
corresponds to `A`, the second to `C`, the third to `G` and the last one to `T`