https://github.com/brentp/faidx

faidx for golang
https://github.com/brentp/faidx

Last synced: 4 months ago
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faidx for golang

• Host: GitHub
• URL: https://github.com/brentp/faidx
• Owner: brentp
• License: mit
• Created: 2015-05-14T02:57:38.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2020-03-01T15:05:01.000Z (over 5 years ago)
• Last Synced: 2025-02-02T04:41:13.359Z (5 months ago)
• Language: Go
• Size: 311 KB
• Stars: 3
• Watchers: 4
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
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faidx reader for golang using biogo's io.seqio.fai

```golang

f, err := faidx.New("some.fasta") 

check(err)

seq, err := f.Get("chr1", 1234, 4444)

st, err := f.Stats("chr1", 1234, 4444)

// fractions of GC content, CpG content and masked (lower-case)

st.GC, st.CpG, st.Masked

```