https://github.com/brentp/nim-kmer

DNA kmer operations for nim
https://github.com/brentp/nim-kmer

genomics kmer nim-lang

Last synced: 2 months ago
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DNA kmer operations for nim

• Host: GitHub
• URL: https://github.com/brentp/nim-kmer
• Owner: brentp
• License: mit
• Created: 2017-10-25T20:11:55.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2022-04-24T07:37:25.000Z (about 3 years ago)
• Last Synced: 2025-04-14T04:10:01.406Z (2 months ago)
• Topics: genomics, kmer, nim-lang
• Language: Nim
• Size: 45.9 KB
• Stars: 14
• Watchers: 2
• Forks: 2
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
this module allows encoding kmers of length up to 31 into uint64's

it is as fast as possible and allows reverse-complenting on encoded data

and adding a single base to the right end or a complemented base for the

left end as is needed when sliding along a sequence to generate all kmers.