https://github.com/broadinstitute/Tangram

Spatial alignment of single cell transcriptomic data.
https://github.com/broadinstitute/Tangram

computational-biology gene-expression scrna-seq snrna-seq spatial-data visium

Last synced: about 2 months ago
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Spatial alignment of single cell transcriptomic data.

• Host: GitHub
• URL: https://github.com/broadinstitute/Tangram
• Owner: broadinstitute
• License: bsd-3-clause
• Created: 2020-08-21T17:33:31.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2024-06-12T19:58:07.000Z (3 months ago)
• Last Synced: 2024-07-13T00:30:07.703Z (2 months ago)
• Topics: computational-biology, gene-expression, scrna-seq, snrna-seq, spatial-data, visium
• Language: Jupyter Notebook
• Homepage:
• Size: 141 MB
• Stars: 236
• Watchers: 13
• Forks: 46
• Open Issues: 47
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

Awesome Lists containing this project

• awesome-deconvolution - Tangram - cell (or single-nucleus) gene expression data onto spatial gene expression data. (see also: [Biancalani and Scalia et al 2021](https://www.nature.com/articles/s41592-021-01264-7)); tags: python; pytorch; scanpy; spatial; transcriptiomics; spot; spot_deconvolution (Methods)
• StarryDivineSky - broadinstitute/Tangram