Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
https://github.com/broadinstitute/cromwell
application bioinformatics cloud containers docker executor ga4gh hpc scala wdl workflow workflow-description-language workflow-execution
Last synced: 2 months ago
JSON representation
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
- Host: GitHub
- URL: https://github.com/broadinstitute/cromwell
- Owner: broadinstitute
- License: bsd-3-clause
- Created: 2015-04-17T19:39:36.000Z (over 9 years ago)
- Default Branch: develop
- Last Pushed: 2024-05-02T22:25:10.000Z (8 months ago)
- Last Synced: 2024-05-03T03:14:26.768Z (8 months ago)
- Topics: application, bioinformatics, cloud, containers, docker, executor, ga4gh, hpc, scala, wdl, workflow, workflow-description-language, workflow-execution
- Language: Scala
- Homepage: http://cromwell.readthedocs.io/
- Size: 44.7 MB
- Stars: 960
- Watchers: 112
- Forks: 350
- Open Issues: 771
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE-ASL-2.0
- Citation: CITATION.md
- Codeowners: CODEOWNERS
- Support: supportedBackends/aws/src/main/scala/cromwell/backend/impl/aws/AwsBatchAsyncBackendJobExecutionActor.scala
- Authors: AUTHORS
Awesome Lists containing this project
- awesome-workflow-engines - Cromwell - Workflow engine written in Scala and designed for simplicity and scalability. Executes workflows written in [WDL](https://github.com/openwdl/wdl) or [CWL](https://www.commonwl.org/). (Full fledged product)
- Awesome-Bioinformatics - Cromwell - A Workflow Management System geared towards scientific workflows. [ [web](https://cromwell.readthedocs.io) ] (Next Generation Sequencing / Workflow Managers)
- awesome-workflow-engines - Cromwell - Workflow engine written in Scala and designed for simplicity and scalability. Executes workflows written in [WDL](https://github.com/openwdl/wdl) or [CWL](https://www.commonwl.org/). (Full fledged product)
- top-life-sciences - **broadinstitute/cromwell** - description-language`, `workflow-execution`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 965 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 351 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 112 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Scala <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD-3-Clause LICENSE.txt <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-07 17:47:13 | (Ranked by starred repositories)
README
[](https://codecov.io/gh/broadinstitute/cromwell)
## Welcome to Cromwell
Cromwell is an open-source Workflow Management System for bioinformatics. Licensing is [BSD 3-Clause](LICENSE.txt).
The [Cromwell documentation has a dedicated site](https://cromwell.readthedocs.io/en/stable).
First time to Cromwell? Get started with [Tutorials](https://cromwell.readthedocs.io/en/stable/tutorials/FiveMinuteIntro/).
### Community
Thinking about contributing to Cromwell? Get started by reading our [Contributor Guide](CONTRIBUTING.md).
Cromwell has a growing ecosystem of community-backed projects to make your experience even better! Check out our [Ecosystem](https://cromwell.readthedocs.io/en/stable/Ecosystem/) page to learn more.
Talk to us:
- [Join the Cromwell Slack workspace](https://join.slack.com/t/cromwellhq/shared_invite/zt-dxmmrtye-JHxwKE53rfKE_ZWdOHIB4g) to discuss the Cromwell workflow engine.
- [Join the OpenWDL Slack workspace](https://join.slack.com/t/openwdl/shared_invite/zt-ctmj4mhf-cFBNxIiZYs6SY9HgM9UAVw) to discuss the evolution of the WDL language itself.
- More information about WDL is available in [that project's repository](https://github.com/openwdl/wdl).
### Capabilities and roadmap
Many users today run their WDL workflows in [Terra](https://app.terra.bio/), a managed cloud bioinformatics platform with built-in WDL support provided by Cromwell. See [here](https://support.terra.bio/hc/en-us/articles/360036379771-Get-started-running-workflows) for a quick-start guide.
Users with specialized needs who wish to install and maintain their own Cromwell instances can [download](https://github.com/broadinstitute/cromwell/releases) a JAR or Docker image. The development team accepts reproducible bug reports from self-managed instances, but cannot feasibly provide direct support.
[Cromwell's backends](https://cromwell.readthedocs.io/en/stable/backends/Backends/) receive development resources proportional to user demand. The team is actively developing for Google Cloud and Microsoft Azure (see [Cromwell on Azure](https://github.com/microsoft/CromwellOnAzure)). Maintenance of other backends is primarily community-based.
Cromwell [supports](https://cromwell.readthedocs.io/en/stable/LanguageSupport/) the WDL workflow language. Cromwell version 80 and above no longer support CWL.
CWL will be re-introduced at a later date in the [Terra platform](https://terra.bio/), using a solution other than Cromwell. See the blog post ["Terra’s roadmap to supporting more workflow languages"](https://terra.bio/terras-roadmap-to-supporting-more-workflow-languages/) for details.
### Security reports
If you believe you have found a security issue please contact `[email protected]`.
### Issue tracking
Need to file an issue? Head over to [Github Issues](https://github.com/broadinstitute/cromwell/issues).
If you previously filed an issue in JIRA, the link is [here](https://broadworkbench.atlassian.net/jira/software/c/projects/CROM/issues). New signups are no longer accepted.
