https://github.com/brocbyte/bioinformatics-prediction

https://github.com/brocbyte/bioinformatics-prediction

Last synced: 7 months ago
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• Host: GitHub
• URL: https://github.com/brocbyte/bioinformatics-prediction
• Owner: brocbyte
• Created: 2022-12-04T10:53:03.000Z (over 3 years ago)
• Default Branch: master
• Last Pushed: 2022-12-07T14:24:10.000Z (over 3 years ago)
• Last Synced: 2025-02-23T15:13:29.094Z (over 1 year ago)
• Language: Jupyter Notebook
• Size: 2.57 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

          
### 1

seq: `MVEYFGQNLNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANPITVEWSAYAQSKTDHVMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLE`

`omegafold & alfafold2` + `MMLigner`

### 2

`AlphaFold2.ipynb`, `omegafold.ipynb`

### 3 Predictions

omegafold\_test\_0cbef.pdb && ./alfafold\_test\_0cbef.result/\*.pdb

From ./alfafold results, rank\_1\_model\_5.pdb was used.

### 4

test\_0cbef\_unrelaxed\_rank\_1\_model\_5.pdb\_superposed\_\_1.pdb

omegafold\_test\_0cbef.pdb\_vs\_test\_0cbef\_unrelaxed\_rank\_1\_model\_5.pdb\_\_1.stats

omegafold\_test\_0cbef.pdb\_vs\_test\_0cbef\_unrelaxed\_rank\_1\_model\_5.pdb\_\_1.afasta

### 5

pymol\_session.pse

### 6

![](./result.png)

### 7

Полученные предсказания имеют общие части, но все же довольно сильно отличаются.