https://github.com/brsynth/scope-viewer

Scope Viewer, a simple viewer for RetroPath suite results
https://github.com/brsynth/scope-viewer

Last synced: 5 months ago
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Scope Viewer, a simple viewer for RetroPath suite results

• Host: GitHub
• URL: https://github.com/brsynth/scope-viewer
• Owner: brsynth
• License: mit
• Created: 2019-07-15T14:46:49.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2019-09-26T09:44:38.000Z (over 6 years ago)
• Last Synced: 2025-09-09T20:14:17.139Z (9 months ago)
• Language: JavaScript
• Homepage:
• Size: 199 KB
• Stars: 1
• Watchers: 1
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# scope-viewer -- Simple viewer for RetroPath suite results

The scope viewer provides a simple interface to consult metabolic graph

such as the scope graph outputted by RetroPath2.0 and RetroPath3.0.

RetroPath tools are retrosynthesis tools to build reaction networks

from a set of source compounds to a set of sink compounds. More details:

- RetroPath2.0 at [https://www.myexperiment.org/workflows/4987.html](https://www.myexperiment.org/workflows/4987.html)

- RetroPath3.0 at [https://github.com/brsynth/RetroPath3](https://github.com/brsynth/RetroPath3)

### Installation

Just download the complete repository.

### Usage

1. Open `scope_viewer.html` in your favorite web browser (e.g. Firefox, Safari, ..)

2. Load the scope network

    - load any `.json` scope file using the "Browse to JSON" input

    - example of scope file is provided in the `example` folder

3. Load the depiction of compounds (optional)

    - for better visualization experience, load `.svg` depiction of compounds

    using the "Browse to SVGs" input

    - example of `.svg` depictions are provided in the `example` folder

    - to load all depictions at once, browse to the folder containing `.svg`

    files, then select all files using [CTRL] + [A] or [CMD] + [A] keyboard

    shortcuts

    

### Notice

- In case the scope viewer become unresponsive -- which is possible when trying

to load a second scope file -- refresh the HTML page.

## Release

- 20190926: adding compatibility with RetroPath3.0 (optional chemical score)

- 20170524: first release for RetroPath2.0