https://github.com/brsynth/selenzy-wrapper
https://github.com/brsynth/selenzy-wrapper
synbio
Last synced: 5 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/brsynth/selenzy-wrapper
- Owner: brsynth
- License: mit
- Created: 2021-07-13T12:52:33.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2023-05-17T08:33:54.000Z (about 3 years ago)
- Last Synced: 2025-09-09T20:14:11.658Z (9 months ago)
- Topics: synbio
- Language: Python
- Homepage:
- Size: 682 KB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
- Authors: AUTHORS.md
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README
# selenzy-wrapper - rpSBML wrapper for selenzy tool
## Install
### From Conda
```sh
[sudo] conda install -c brsynth -c conda-forge -c bioconda selenzy_wrapper
```
## Use
### CLI
```
python -m selenzy_wrapper tests/data/pathway.xml selenzy.xml
```
### As a Python module
```python
from selenzy_wrapper import selenzy_pathway
pathway = rpPathway.from_rpSBML(infile='tests/data/pathway.xml')
selenzy_pathway(pathway=pathway)
pathway.to_rpSBML().write_to_file('selenzy.xml')
```
## Tests
Please follow instructions below ti run tests:
```
cd tests
pytest -v
```
For further tests and development tools, a CI toolkit is provided in `ci` folder (see [ci/README.md](ci/README.md)). -->
## Authors
* **Joan Hérisson**
## Acknowledgments
* Thomas Duigou
## Licence
selenzy-wrapper is released under the MIT licence. See the LICENCE file for details.