https://github.com/brsynth/taxonid
Get taxon id from NCBI taxonomy database
https://github.com/brsynth/taxonid
Last synced: 5 months ago
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Get taxon id from NCBI taxonomy database
- Host: GitHub
- URL: https://github.com/brsynth/taxonid
- Owner: brsynth
- License: mit
- Created: 2023-05-22T13:17:49.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2023-10-24T10:02:48.000Z (over 2 years ago)
- Last Synced: 2025-09-09T20:14:11.767Z (9 months ago)
- Language: Python
- Size: 12.7 KB
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
- Authors: AUTHORS.md
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README
# taxonid - Get taxon id from NCBI taxonomy database
## Install
### From Conda
```sh
[sudo] conda install -c conda-forge taxonid
```
## Use
### CLI
```
python -m taxonid "Escherichia coli str. K-12 substr. MG1655"
```
### As a Python module
```python
from taxonid import get_from_label
taxon_id = get_from_label("Escherichia coli str. K-12 substr. MG1655")
```
## Tests
Please follow instructions below ti run tests:
```
cd tests
pytest -v
```
For further tests and development tools, a CI toolkit is provided in `ci` folder (see [ci/README.md](ci/README.md)). -->
## Authors
* **Joan Hérisson**
## Acknowledgments
* ChatGPT
## Licence
taxonid is released under the MIT licence. See the LICENCE file for details.