https://github.com/brucetony/aop2db

Convert the AOP Wiki database to a relational database.
https://github.com/brucetony/aop2db

biological-data-analysis database

Last synced: 5 months ago
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Convert the AOP Wiki database to a relational database.

• Host: GitHub
• URL: https://github.com/brucetony/aop2db
• Owner: brucetony
• License: mit
• Created: 2021-10-21T07:52:50.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2022-09-08T12:54:53.000Z (almost 4 years ago)
• Last Synced: 2025-10-02T01:09:03.298Z (9 months ago)
• Topics: biological-data-analysis, database
• Language: Python
• Homepage:
• Size: 82 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

README

          
====================================================

AOP2DB |docs| |python_versions| |travis| |coverage|

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Package for compiling the adverse outcome pathway (AOP) data into a relational database. The data is publicly available at the `AOP website `_.

Installation |pypi_version| |pypi_license|

==========================================

``aop2db`` can be directly installed from PyPi with pip::

    $ pip install aop2db

Usage

=====

To load the data into a relational database::

    $ aop2db load

To set the driver of your database::

    $ aop2db conn mysql+pymysql://:@/

Disclaimer

==========

AOP2DB is a scientific software that has been developed in an academic capacity, and thus comes with no warranty or

guarantee of maintenance, support, or back-up of data.

.. |pypi_version| image:: https://img.shields.io/pypi/v/aop2db.svg

    :target: https://pypi.python.org/pypi/aop2db

    :alt: Current version on PyPI

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/aop2db.svg

    :alt: Stable Supported Python Versions

.. |travis| image:: https://app.travis-ci.com/brucetony/aop2db.svg?branch=master

    :alt: Current build status

.. |docs| image:: https://readthedocs.org/projects/aop2db/badge/?version=latest

        :target: https://readthedocs.org/projects/aop2db/badge/?version=latest

        :alt: Documentation Status

.. |pypi_license| image:: https://img.shields.io/pypi/l/aop2db.svg

    :alt: MIT

.. |coverage| image:: https://codecov.io/gh/brucetony/aop2db/branch/master/graphs/badge.svg?

    :alt: Coverage Status