https://github.com/burgerga/cptrackrapp

Shiny App for CPTrackR
https://github.com/burgerga/cptrackrapp

Last synced: 4 days ago
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Shiny App for CPTrackR

• Host: GitHub
• URL: https://github.com/burgerga/cptrackrapp
• Owner: burgerga
• License: other
• Created: 2021-01-12T21:56:07.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2023-12-13T23:15:19.000Z (about 1 year ago)
• Last Synced: 2024-11-15T15:44:23.240Z (2 months ago)
• Language: R
• Size: 98.6 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • License: LICENSE
  • Citation: CITATION.cff

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# CPTrackRApp

[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)

## Overview

The goal of CPTrackRApp is to [fix track identifiers](https://forum.image.sc/t/tracking-label/16409) from [CellProfiler](https://cellprofiler.org/)'s sqlite output. CPTrackRApp is a Shiny app that analyses the sqlite file, and determines the parameters for [CPTrackR](https://github.com/burgerga/CPTrackR) to fix the track. 

Additionally it shows the CellProfiler pipeline metadata, and previews the fixed tracks.

## Installation

You can install the development version of CPTrackRApp from with:

```{r, eval=F}

# install.packages("remotes")

remotes::install_github("burgerga/CPTrackRApp")

```

## Usage

To start the app use 

```{r, eval=F}

CPTrackRApp::run_app()

```

**Screenshot:**  

![CPTrackRApp screenshot](man/figures/screenshot.png)