https://github.com/buswinka/skoots

SKeleton Oriented ObjecT Segmentation (SKOOTS) - instance segmentation of large, densely packed objects in biomedical images
https://github.com/buswinka/skoots

Last synced: 2 months ago
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SKeleton Oriented ObjecT Segmentation (SKOOTS) - instance segmentation of large, densely packed objects in biomedical images

• Host: GitHub
• URL: https://github.com/buswinka/skoots
• Owner: buswinka
• License: mit
• Created: 2022-10-11T00:35:29.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-03-06T18:21:32.000Z (11 months ago)
• Last Synced: 2024-08-09T22:09:48.321Z (5 months ago)
• Language: Python
• Homepage: https://skoots.readthedocs.io
• Size: 1.95 MB
• Stars: 3
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
![](resources/skooting_in_progress_v2.png)

# SKOOTS

 

SKeletOn ObjecT Segmentation - 2D/3D instance segmentation of arbitrary biomedical images.

## 

To install, make sure pyTorch 2.1 is installed with CUDA support.

```bash

pip install skoots

```

Documentation: skoots.readthedocs.io

BioRxiv: https://www.biorxiv.org/content/10.1101/2023.05.05.539611v1