https://github.com/busyyang/ecgnet

ECGNet复现论文P-QRS-T localization in ECG using deep learning
https://github.com/busyyang/ecgnet

cnn-1d deeplearning ecg fcn keras

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ECGNet复现论文P-QRS-T localization in ECG using deep learning

• Host: GitHub
• URL: https://github.com/busyyang/ecgnet
• Owner: busyyang
• License: mit
• Created: 2019-11-26T09:31:18.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2019-12-06T10:06:18.000Z (about 5 years ago)
• Last Synced: 2023-10-19T19:05:09.947Z (about 1 year ago)
• Topics: cnn-1d, deeplearning, ecg, fcn, keras
• Language: Python
• Size: 107 KB
• Stars: 13
• Watchers: 2
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md
  • License: LICENSE

Awesome Lists containing this project

README

        
ECG R-wave and P-wave localization in paper:

~~~

@InProceedings{Abrishami2018,

  author    = {H. {Abrishami} and M. {Campbell} and C. {Han} and R. {Czosek} and X. {Zhou}},

  title     = {P-{QRS}-T localization in {ECG} using deep learning},

  booktitle = {Proc. IEEE EMBS Int. Conf. Biomedical Health Informatics (BHI)},

  year      = {2018},

  pages     = {210--213},

  month     = mar,

  doi       = {10.1109/BHI.2018.8333406}

}

~~~

Since the code of this paper is not open, I implemented the code according this paper with `keras` framework.

# Data preprocess

Data preprocessed in MATLAB. Download data files from `https://www.physionet.org/content/qtdb/1.0.0/` with `download_QTDB.m`. PC will get `xxxann.mat` for Y and `xxxdata.mat` for X.\

For input data to keras conveniently, `Segmentor.m` will segment all recording into complexes and position of P-wave and R-wave is also saved in `segmentors.mat`.\

if you load `segmentor.mat` into matlab. You will get `segs` with 96863 by 300 and `anns` with dimention of 96863 by 2 in workspace. That mean there are 96863 complexes with length of 300 sampling points.\

`ann[:,1]` presents position of P-wave. `ann[:,2]` presents position of R-wave. More detail can be found in paper. 

# models

for fully-connected net usage:

~~~python

    python ./paper_models_codes/denseNet_P_R_localization.py

~~~

for 1D CNN usage:

~~~python

    python ./paper_models_codes/ECGNet.py

~~~

for 1D CNN with dropout usage:

~~~python

    python ./paper_models_codes/ECGNet_Dropout.py

~~~