https://github.com/cameronmartino/bacdivepy

https://github.com/cameronmartino/bacdivepy

bacdive cultivation microbiology

Last synced: 6 days ago
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• Host: GitHub
• URL: https://github.com/cameronmartino/bacdivepy
• Owner: cameronmartino
• License: bsd-2-clause
• Created: 2018-08-23T02:23:05.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2021-06-22T16:36:52.000Z (almost 4 years ago)
• Last Synced: 2025-04-02T09:01:38.083Z (about 2 months ago)
• Topics: bacdive, cultivation, microbiology
• Language: Python
• Size: 1.5 MB
• Stars: 5
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: COPYING.txt

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README

        

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# The project has moved! Please use: https://github.com/JuliaHelmecke/bacdive-api

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# BacDivePy

A python interface for the [Bacterial Diversity Metadatabase][BD] ([Söhngen et al. 2014 & 2016](#references)) of the [DSMZ (German Collection of Microorganisms and Cell Cultures)][DMSZ]. BacDivePy is modeled after [BacDiveR](https://github.com/TIBHannover/BacDiveR)

[BD]: https://bacdive.dsmz.de/

[DMSZ]: https://www.dsmz.de/about-us.html

[reg]: https://bacdive.dsmz.de/api/bacdive/registration/register/

## Installation

For the latest stable version

`pip install bacdive`

or for the latest dev. version

`pip install git+https://github.com/cameronmartino/BacDivePy.git`

## Tutorials

* [Login and Example Use](https://github.com/cameronmartino/BacDivePy/blob/master/Doc/login_and_searching.ipynb)

## References

* Söhngen, Carola, Boyke Bunk, Adam Podstawka, Dorothea Gleim, and Jörg

Overmann. 2014. “BacDive—the Bacterial Diversity Metadatabase.” *Nucleic

Acids Research* 42 (D1): D592–D599.

[doi:10.1093/nar/gkt1058](https://doi.org/10.1093/nar/gkt1058).

* Söhngen, Carola, Adam Podstawka, Boyke Bunk, Dorothea Gleim, Anna

Vetcininova, Lorenz Christian Reimer, Christian Ebeling, Cezar

Pendarovski, and Jörg Overmann. 2016. “BacDive – the Bacterial Diversity

Metadatabase in 2016.” *Nucleic Acids Research* 44 (D1): D581–D585.

[doi:10.1093/nar/gkv983](https://doi.org/10.1093/nar/gkv983).

* [BacDiveR](https://github.com/TIBHannover/BacDiveR)