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https://github.com/caniko/pydantic-numpy
Package that integrates NumPy Arrays into Pydantic
https://github.com/caniko/pydantic-numpy
Last synced: 4 days ago
JSON representation
Package that integrates NumPy Arrays into Pydantic
- Host: GitHub
- URL: https://github.com/caniko/pydantic-numpy
- Owner: caniko
- License: bsd-4-clause
- Created: 2023-03-08T11:18:21.000Z (over 1 year ago)
- Default Branch: trunk
- Last Pushed: 2024-06-17T14:16:02.000Z (4 months ago)
- Last Synced: 2024-09-21T06:14:28.292Z (15 days ago)
- Language: Python
- Homepage:
- Size: 257 KB
- Stars: 34
- Watchers: 3
- Forks: 8
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- awesome-pydantic - pydantic-numpy - NumPy typing for Pydantic; `NumpyModel` Pydantic model for numpy arrays for saving and loading numpy files (Object Mapping)
- awesome-pydantic - pydantic-numpy - NumPy typing for Pydantic; `NumpyModel` Pydantic model for numpy arrays for saving and loading numpy files (Object Mapping)
README
# pydantic-numpy
[](https://python-poetry.org/)
## Usage
Package that integrates NumPy Arrays into Pydantic!
- `pydantic_numpy.typing` provides many typings such as `NpNDArrayFp64`, `Np3DArrayFp64` (float64 that must be 3D)! Works with both `pydantic.BaseModel` and `pydantic.dataclass`
- `NumpyModel` (derived from `pydantic.BaseModel`) make it possible to dump and load `np.ndarray` within model fields alongside other fields that are not instances of `np.ndarray`!
See the [`test.helper.testing_groups`](https://github.com/caniko/pydantic-numpy/blob/trunk/tests/helper/testing_groups.py) to see types that are defined explicitly.
### Examples
For more examples see [test_ndarray.py](./tests/test_typing.py)
```python
import numpy as np
from pydantic import BaseModel
import pydantic_numpy.typing as pnd
from pydantic_numpy import np_array_pydantic_annotated_typing
from pydantic_numpy.model import NumpyModel, MultiArrayNumpyFile
class MyBaseModelDerivedModel(BaseModel):
any_array_dtype_and_dimension: pnd.NpNDArray
# Must be numpy float32 as dtype
k: np_array_pydantic_annotated_typing(data_type=np.float32)
shorthand_for_k: pnd.NpNDArrayFp32
must_be_1d_np_array: np_array_pydantic_annotated_typing(dimensions=1)
class MyDemoNumpyModel(NumpyModel):
k: np_array_pydantic_annotated_typing(data_type=np.float32)
# Instantiate from array
cfg = MyDemoModel(k=[1, 2])
# Instantiate from numpy file
cfg = MyDemoModel(k="path_to/array.npy")
# Instantiate from npz file with key
cfg = MyDemoModel(k=MultiArrayNumpyFile(path="path_to/array.npz", key="k"))
cfg.k # np.ndarray[np.float32]
cfg.dump("path_to_dump_dir", "object_id")
cfg.load("path_to_dump_dir", "object_id")
```
`NumpyModel.load` requires the original model:
```python
MyNumpyModel.load()
```
Use `model_agnostic_load` when you have several models that may be the correct model:
```python
from pydantic_numpy.model import model_agnostic_load
cfg.dump("path_to_dump_dir", "object_id")
equals_cfg = model_agnostic_load("path_to_dump_dir", "object_id", models=[MyNumpyModel, MyDemoModel])
```
### Custom type
There are two ways to define. Function derived types with `pydantic_numpy.helper.annotation.np_array_pydantic_annotated_typing`.
Function derived types don't work with static type checkers like Pyright and MyPy. In case you need the support,
just create the types yourself:
```python
NpStrict1DArrayInt64 = Annotated[
np.ndarray[tuple[int], np.dtype[np.int64]],
NpArrayPydanticAnnotation.factory(data_type=np.int64, dimensions=1, strict_data_typing=True),
]
```
#### Custom serialization
If the default serialization of NumpyDataDict, as outlined in [typing.py](https://github.com/caniko/pydantic-numpy/blob/trunk/pydantic_numpy/helper/typing.py), doesn't meet your requirements, you have the option to define a custom type with its own serializer. This can be achieved using the NpArrayPydanticAnnotation.factory method, which accepts a custom serialization function through its serialize_numpy_array_to_json parameter. This parameter expects a function of the form `Callable[[npt.ArrayLike], Iterable]`, allowing you to tailor the serialization process to your specific needs.
Example below illustrates definition of 1d-array of `float32` type that serializes to flat Python list (without nested dict as in default `NumpyDataDict` case):
```python
def _serialize_numpy_array_to_float_list(array_like: npt.ArrayLike) -> Iterable:
return np.array(array_like).astype(float).tolist()
Np1DArrayFp32 = Annotated[
np.ndarray[tuple[int], np.dtype[np.float32]],
NpArrayPydanticAnnotation.factory(
data_type=np.float32,
dimensions=1,
strict_data_typing=False,
serialize_numpy_array_to_json=_serialize_numpy_array_to_float_list,
),
]
```
### Install
```shell
pip install pydantic-numpy
```
### History
The original idea originates from [this discussion](https://gist.github.com/danielhfrank/00e6b8556eed73fb4053450e602d2434), and forked from [cheind's](https://github.com/cheind/pydantic-numpy) repository.