https://github.com/cannin/shiny_network

Example R Shiny application cytoscape/cyjShiny
https://github.com/cannin/shiny_network

cytoscape shiny

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Example R Shiny application cytoscape/cyjShiny

• Host: GitHub
• URL: https://github.com/cannin/shiny_network
• Owner: cannin
• License: apache-2.0
• Created: 2020-07-28T04:51:43.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2020-08-22T19:54:36.000Z (about 5 years ago)
• Last Synced: 2025-03-30T05:41:46.745Z (6 months ago)
• Topics: cytoscape, shiny
• Language: R
• Homepage:
• Size: 842 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Introduction 

Example R Shiny application using the [Cytoscape cyjShiny](https://github.com/cytoscape/cyjShiny) widget. The example can: 

* Map data values onto network 

* Switch between networks (e.g., KEGG pathways)

* Display values of selected nodes on table

* Save results to PDF

![R Shiny cyjShiny Example Network](screenshot_shiny_cyjShiny_network.png)

# Installation 

See shinyNetworkDemoApp.R for necessary packages 

# Run 

shiny::runApp("shinyNetworkDemoApp.R")

# File Descriptions 

* data/conditions.rds: data.frame, rows are genes, columns are include the values of the genes for different conditions (or samples); each gene/condition has been pre-mapped to colors in the colors* columns 

* data/PATHWAY.json: an already laid out network for cytoscape.js 

* data/PATHWAY.rds: igraph version of the network, used for network export 

* default_style.js: configuration for cytoscape.js 

* shinyNetworkDemoApp.R: the Shiny app

* graphToJSON.R: converts graphNEL network to cytoscape.js; compatible with Cytoscape desktop