https://github.com/carpentries-incubator/bioc-intro

Bioconductor data science introduction
https://github.com/carpentries-incubator/bioc-intro

beta bioconductor carpentries-incubator english hacktoberfest lesson life-sciences r

Last synced: 21 days ago
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Bioconductor data science introduction

• Host: GitHub
• URL: https://github.com/carpentries-incubator/bioc-intro
• Owner: carpentries-incubator
• License: other
• Created: 2020-09-14T13:56:14.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2024-10-22T01:05:38.000Z (3 months ago)
• Last Synced: 2024-10-23T00:09:38.752Z (3 months ago)
• Topics: beta, bioconductor, carpentries-incubator, english, hacktoberfest, lesson, life-sciences, r
• Language: R
• Homepage: https://carpentries-incubator.github.io/bioc-intro
• Size: 723 MB
• Stars: 27
• Watchers: 13
• Forks: 28
• Open Issues: 23
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.md
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION
  • Authors: AUTHORS

Awesome Lists containing this project

README

        
# Introduction to genomic data analysis with R and Bioconductor

[![Create a Slack Account with us](https://img.shields.io/badge/Create_Slack_Account-The_Carpentries-071159.svg)](https://swc-slack-invite.herokuapp.com/)

## Contributing

We welcome all contributions to improve the lesson! Maintainers will

do their best to help you if you have any questions, concerns, or

experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our [Contribution

Guide](CONTRIBUTING.md) and have a look at the [more detailed

guidelines][lesson-example] on proper formatting, ways to render the

lesson locally, and even how to write new episodes.

Please see the current list of [issues][FIXME] for ideas for

contributing to this repository. For making your contribution, we use

the GitHub flow, which is nicely explained in the chapter

[Contributing to a

Project](http://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project)

in Pro Git by Scott Chacon.

Look for the tag

![good\_first\_issue](https://img.shields.io/badge/-good%20first%20issue-gold.svg). This

indicates that the maintainers will welcome a pull request fixing this

issue.

## Useful links

- If you're going to be developing lesson material for the first time

  according to our design principles, consider reading the

  [Carpentries Curriculum Development Handbook][cdh]

- Consult the [Lesson Example][lesson-example] website to find out more about

  working with the lesson template

## Lesson team

This lesson has been developed and is current maintained by

- Laurent Gatto (maintainer)

- Charlotte Soneson

- Jenny Drnevich

- Robert Castelo

- Kevin Rue-Albert

We would also like to acknowledge the contributions of:

- Oliver Crook, Sarah Kaspar, Nick Hirschmueller, Lisa Breckels and Maria Doyle for their contributions during the Bioconductor introduction workshop in Heidelberg, as part of EuroBioc2021 |> 2022.

- Axelle Loriot, Marco Chiapelle, Manon Martin and Toby Hodges for various contributions and discussions.

- lmsimp, alorot, manonmartin, mchiapello, stavares843, JennyZadeh, csdaw, ninja-1337, fursham-h, lagerratrobe, fmichonneau, federicomarini, tobyhodges for pull requests.

If we have contributed but we missed you, apologies, and feel free to add yourself with a PR.

## Authors

A list of contributors to the lesson can be found in [AUTHORS](AUTHORS)

## Citation

To cite this lesson, please consult with [CITATION](CITATION)

[lesson-example]: https://carpentries.github.io/lesson-example

[cdh]: https://cdh.carpentries.org

## Testing locally

To test locally, run the following in the lessons directory:

```r

sandpaper::serve()

```

For more details, see the [workbench installation

instructions](https://carpentries.github.io/workbench/#installation].