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https://github.com/caseyjlaw/rtpipe

Pipeline for real-time fast transient detection in radio interferometric data (see also https://github.com/realfastvla/rfpipe)
https://github.com/caseyjlaw/rtpipe

astronomy binder casa interferometry jupyter-notebook notebook python radio transients

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Pipeline for real-time fast transient detection in radio interferometric data (see also https://github.com/realfastvla/rfpipe)

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README 

        
rtpipe

==



ascl:1706.002

[![Binder](http://mybinder.org/badge.svg)](http://mybinder.org:/repo/caseyjlaw/reproducing-fast-imaging-rrats).



`rtpipe` (as in 'real-time pipeline') is a Python library for searching radio interferometry data for fast (subsecond) transients. This differs from traditional time-domain techniques used on large single-dish telescopes in that visibilities also measure spatial information (i.e., make images).



To view a demonstration of `rtpipe`, see this [Jupyter notebook with FRB 121102 data](https://github.com/caseyjlaw/FRB121102/blob/master/demo_FRB121102.ipynb). To execute that notebook, you will need to install the code and download about 1 GB of data. Alternatively, you can also explore some simpler features in a Jupyter notebook using [Binder](http://mybinder.org:/repo/caseyjlaw/reproducing-fast-imaging-rrats).



`rtpipe` supersedes [tpipe](http://github.com/caseyjlaw/tpipe) by using a paradigm that defines how to break long (large) data into smaller, independent pieces with a single treatment (flagging, image gridding, calibration, etc.).



Requirements

---



* Python 2.7

* Scientific Python (e.g., supported by NumFOCUS): numpy, scipy, matplotlib, multiprocessing, bokeh

* Cython 0.19.1+

* [pyFFTW](https://pypi.python.org/pypi/pyFFTW) 0.92+

* [pwkit](http://github.com/pkgw/pwkit) (for access to CASA libraries)

* [sdmpy](http://github.com/caseyjlaw/sdmpy) (for reading SDM format data)



Install

---



If you have [anaconda](https://www.continuum.io/downloads), you can install `rtpipe` like this:



    conda install -c conda-forge numpy scipy jupyter bokeh cython matplotlib pwkit casa-tools casa-python casa-data

    pip install rtpipe



I've had one report that installing from the conda-forge channel does not pick up some packages. If so, you may also try installing like this:



    conda install -c conda-forge numpy scipy jupyter bokeh cython matplotlib

    conda install -c pkgw-forge pwkit casa-tools casa-python casa-data

    pip install rtpipe



Alternate Install

-----



Alternatively, you can install by building pwkit yourself to access CASA libraries. This is a bit tricky, but can be done by installing [CASA](https://casa.nrao.edu/) and setting environment variables to see its libraries:



    setenv CASA_HOME /home/casa/packages/RHEL6/stable/current

    setenv PYTHONPATH ${PYTHONPATH}:${CASA_HOME}/lib/python2.7

    setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${CASA_HOME}/lib

    setenv CASAPATH "${CASA_HOME} linux local ${HOST}"



The key is being sure that the python interpreter is binary-compatible with that used to build CASA. Note that this approach has not been tested recently and there are new pieces (e.g., bokeh) that are not explicit dependencies in the `rtpipe` build. And, really, you should be using the anaconda installer anyway!



Contributors

---

* [Casey Law](http://www.twitter.com/caseyjlaw)

* Peter Williams (CASA libraries and general advice)

* Paul Demorest (sdmpy)



Citation

----

If you use rtpipe, please support open software by citing the record on the [Astrophysics Source Code Library](ascl.net) at http://ascl.net/1706.002. In AASTeX, you can do this like so:

```

\software{..., rtpipe \citep{2017ascl.soft06002L}, ...}

```



Acknowledgements

--------

This code has been supported by the University of California Office of the President under Lab Fees Research Program Award

237863 and NSF ATI program under Grant 1611606.