https://github.com/cbrnr/sleepecg

Sleep stage detection using ECG
https://github.com/cbrnr/sleepecg

ecg heartrate peak-detection python sleep-staging

Last synced: 3 days ago
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Sleep stage detection using ECG

• Host: GitHub
• URL: https://github.com/cbrnr/sleepecg
• Owner: cbrnr
• License: bsd-3-clause
• Created: 2021-07-20T09:40:32.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-11-11T07:35:40.000Z (about 1 month ago)
• Last Synced: 2024-11-20T07:38:48.080Z (22 days ago)
• Topics: ecg, heartrate, peak-detection, python, sleep-staging
• Language: Python
• Homepage:
• Size: 3.13 MB
• Stars: 101
• Watchers: 4
• Forks: 25
• Open Issues: 10
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-hrv - cbrnr/sleepecg

README

        
![Python](https://img.shields.io/pypi/pyversions/sleepecg.svg?logo=python&logoColor=white)

[![PyPI](https://img.shields.io/pypi/v/sleepecg)](https://pypi.org/project/sleepecg/)

[![Docs](https://readthedocs.org/projects/sleepecg/badge/?version=latest)](https://sleepecg.readthedocs.io/en/stable/index.html)

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## SleepECG

SleepECG provides tools for sleep stage classification when [EEG](https://en.wikipedia.org/wiki/Electroencephalography) signals are not available. Based only on [ECG](https://en.wikipedia.org/wiki/Electrocardiography), SleepECG provides functions for

- downloading and reading open polysomnography datasets,

- detecting heartbeats from ECG signals, and

- classifying sleep stages (which includes preprocessing, feature extraction, and classification).

### Documentation

Documentation for SleepECG is available on [Read the Docs](https://sleepecg.readthedocs.io/en/stable/index.html). Check out the [changelog](https://github.com/cbrnr/sleepecg/blob/main/CHANGELOG.md) to learn what we added, changed, or fixed.

### Installation

SleepECG is available on PyPI and can be installed with [pip](https://pip.pypa.io/en/stable/):

```

pip install sleepecg

```

SleepECG with all optional dependencies can be installed with the following command:

```

pip install "sleepecg[full]"

```

If you want the latest development version, use the following command:

```

pip install git+https://github.com/cbrnr/sleepecg

```

### Example

The following example detects heartbeats in a short ECG (a one-dimensional NumPy array):

```python

import numpy as np

from sleepecg import detect_heartbeats, get_toy_ecg

ecg, fs = get_toy_ecg()  # 5 min of ECG data at 360 Hz

beats = detect_heartbeats(ecg, fs)  # indices of detected heartbeats

```

### Contributing

The [contributing guide](https://github.com/cbrnr/sleepecg/blob/main/CONTRIBUTING.md) contains detailed instructions on how to contribute to SleepECG.