https://github.com/ccdmb/slurm_scripts
SLURM script collection
https://github.com/ccdmb/slurm_scripts
Last synced: about 2 months ago
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SLURM script collection
- Host: GitHub
- URL: https://github.com/ccdmb/slurm_scripts
- Owner: ccdmb
- Created: 2020-07-13T01:20:16.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2022-11-21T10:17:17.000Z (over 3 years ago)
- Last Synced: 2025-09-09T23:31:31.156Z (9 months ago)
- Language: Shell
- Size: 119 KB
- Stars: 1
- Watchers: 4
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# CCDM bioinformatics slurm scripts
This repository contains a number of SLURM batch scripts, templates, and helper tools that help us work effectively on Pawsey supercomputers.
The scripts should also work on other SLURM based supercomputing clusters, but we can't guarantee it.
## Templates
For info on the pipeline and job templates see [templates](./templates).
These job templates provide examples of how to properly allocate resources for different types of jobs.
In the future we may have some semi-automated dependency based pipelines in here.
## Helper scripts
For details of the scripts available see the [docs](./docs).
The helper scripts are still relatively new so may have some bugs to iron out.
But I think they should prove useful as they are based on a pattern that I've used often.