https://github.com/cdanielmachado/carveme

CarveMe: genome-scale metabolic model reconstruction
https://github.com/cdanielmachado/carveme

genome-scale metabolism modeling python reconstruction

Last synced: 5 months ago
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CarveMe: genome-scale metabolic model reconstruction

• Host: GitHub
• URL: https://github.com/cdanielmachado/carveme
• Owner: cdanielmachado
• License: other
• Created: 2017-07-26T13:43:30.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2025-09-12T10:21:12.000Z (9 months ago)
• Last Synced: 2026-01-04T14:58:19.229Z (5 months ago)
• Topics: genome-scale, metabolism, modeling, python, reconstruction
• Language: Python
• Homepage:
• Size: 128 MB
• Stars: 192
• Watchers: 9
• Forks: 62
• Open Issues: 50
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![PyPI version](https://badge.fury.io/py/carveme.svg)](https://badge.fury.io/py/carveme) [![Documentation Status](http://readthedocs.org/projects/carveme/badge/?version=latest)](http://carveme.readthedocs.io/en/latest/?badge=latest)

![CarveMe](logo_300px.png)

## Genome-scale metabolic model reconstruction with CarveMe

CarveMe is a python-based tool for genome-scale metabolic model reconstruction.

### Documentation

For instructions on installation and usage please check: http://carveme.readthedocs.io/

 

### Credits and License

For citation purposes please refer to our paper:

D. Machado et al, "Fast automated reconstruction of genome-scale metabolic models for microbial species and communities", Nucleic Acids Research, gky537, 2018. doi: https://doi.org/10.1093/nar/gky537

Developed at:

- European Molecular Biology Laboratory (2017-2019).

- Norwegian University of Science and Technology (Since 2020)

CarveMe is now an official service of ELIXIR Norway.

![ELIXIR](elixir.png)