https://github.com/cdcgov/seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
https://github.com/cdcgov/seqsender
bioinformatics-pipeline biosample cdc cdc-influenza-division genbank gisaid gisaid-format gisaid-upload gisaid-uploader ncbi-biosamples ncbi-genbank ncbi-sra ncbi-submission ncird ncird-id seqsender sra
Last synced: 10 days ago
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Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
- Host: GitHub
- URL: https://github.com/cdcgov/seqsender
- Owner: CDCgov
- License: apache-2.0
- Created: 2021-08-12T13:18:19.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2025-04-07T18:40:45.000Z (15 days ago)
- Last Synced: 2025-04-13T00:44:37.859Z (10 days ago)
- Topics: bioinformatics-pipeline, biosample, cdc, cdc-influenza-division, genbank, gisaid, gisaid-format, gisaid-upload, gisaid-uploader, ncbi-biosamples, ncbi-genbank, ncbi-sra, ncbi-submission, ncird, ncird-id, seqsender, sra
- Language: Python
- Homepage: https://cdcgov.github.io/seqsender/
- Size: 261 MB
- Stars: 35
- Watchers: 3
- Forks: 14
- Open Issues: 7
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Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE