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https://github.com/cecoeco/prisma.jl
Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)
https://github.com/cecoeco/prisma.jl
checklist data-visualization flow-diagram meta-analyses nlp research systematic-reviews
Last synced: about 4 hours ago
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Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)
- Host: GitHub
- URL: https://github.com/cecoeco/prisma.jl
- Owner: cecoeco
- License: mit
- Created: 2024-02-27T18:46:34.000Z (8 months ago)
- Default Branch: main
- Last Pushed: 2024-10-27T10:36:23.000Z (11 days ago)
- Last Synced: 2024-10-27T15:17:52.505Z (11 days ago)
- Topics: checklist, data-visualization, flow-diagram, meta-analyses, nlp, research, systematic-reviews
- Language: TypeScript
- Homepage: https://cecoeco.github.io/PRISMA.jl/
- Size: 2.92 MB
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
- Citation: CITATION.bib
Awesome Lists containing this project
README
# PRISMA.jl
`PRISMA.jl` is a Julia package and [web application](https://prisma-jl.onrender.com) powered by [`React.js`](https://react.dev/) and [`Oxygen.jl`](https://github.com/OxygenFramework/Oxygen.jl) for generating checklists and flow diagrams based on [the 2020 **P**referred **R**eporting **I**tems for **S**ystematic **R**eviews and **M**eta-**A**nalyses (PRISMA) statement (Page et al., 2021).](https://doi.org/10.1186/s13643-021-01626-4)
**Features:**
- functions to generate 2020 PRISMA checklists using natural language processing
- functions to upload study data to create 2020 PRISMA flow diagrams via [`Graphviz`](https://graphviz.org/)
- an interactive web app requiring zero programming knowledge
**Installation:** use this command in the Julia REPL: `using Pkg; Pkg.add("PRISMA")`
**Documentation:** 
**Examples:**
create and save a flow diagram:
```julia
using PRISMA: flow_diagram, flow_diagram_save
flow_diagram_save("example.svg", flow_diagram(side_boxes=false))
```
show output:
view empty checklist data:
```julia
using PRISMA: checklist_dataframe
println(checklist_dataframe())
```
show output:
```
49×4 DataFrame
Row │ Section and Topic Item # Checklist Item Location where item is reported
│ String String String String
─────┼───────────────────────────────────────────────────────────────────────────────────────────────────────────────
1 │ TITLE
2 │ Title 1 Identify the report as a systema…
3 │ ABSTRACT
4 │ Abstract 2 See the PRISMA 2020 for Abstract…
5 │ INTRODUCTION
6 │ Rationale 3 Describe the rationale for the r…
7 │ Objectives 4 Provide an explicit statement of…
8 │ METHODS
9 │ Eligibility criteria 5 Specify the inclusion and exclus…
10 │ Information sources 6 Specify all databases, registers…
11 │ Search strategy 7 Present the full search strategi…
12 │ Selection process 8 Specify the methods used to deci…
13 │ Data collection process 9 Specify the methods used to coll…
14 │ Data items 10a List and define all outcomes for…
15 │ 10b List and define all other variab…
16 │ Study risk of bias assessment 11 Specify the methods used to asse…
17 │ Effect measures 12 Specify for each outcome the eff…
18 │ Synthesis methods 13a Describe the processes used to d…
19 │ 13b Describe any methods required to…
20 │ 13c Describe any methods used to tab…
21 │ 13d Describe any methods used to syn…
22 │ 13e Describe any methods used to exp…
23 │ 13f Describe any sensitivity analyse…
24 │ Reporting bias assessment 14 Describe any methods used to ass…
25 │ Certainty assessment 15 Describe any methods used to ass…
26 │ RESULTS
27 │ Study selection 16a Describe the results of the sear…
28 │ 16b Cite studies that might appear t…
29 │ Study characteristics 17 Cite each included study and pre…
30 │ Risk of bias in studies 18 Present assessments of risk of b…
31 │ Results of individual studies 19 For all outcomes, present, for e…
32 │ Results of syntheses 20a For each synthesis, briefly summ…
33 │ 20b Present results of all statistic…
34 │ 20c Present results of all investiga…
35 │ 20d Present results of all sensitivi…
36 │ Reporting biases 21 Present assessments of risk of b…
37 │ Certainty of evidence 22 Present assessments of certainty…
38 │ DISCUSSION
39 │ Discussion 23a Provide a general interpretation…
40 │ 23b Discuss any limitations of the e…
41 │ 23c Discuss any limitations of the r…
42 │ 23d Discuss implications of the resu…
43 │ OTHER INFORMATION
44 │ Registration and protocol 24a Provide registration information…
45 │ 24b Indicate where the review protoc…
46 │ 24c Describe and explain any amendme…
47 │ Support 25 Describe sources of financial or…
48 │ Competing interests 26 Identify the report as a systema…
49 │ Availability of data, code and o… 27 Report which of the following ar…
```
**Citing:** please consider citing `PRISMA.jl` and giving the GitHub repository a star, if possible.
The citation information may be found in the [`CITATION.bib`](CITATION.bib) file within the repository
**References:**
> Bezanson, J., Edelman, A., Karpinski, S., & Shah, V. B. (2017). Julia: A fresh approach to numerical computing. SIAM Review, 59(1), 65–98. https://doi.org/10.1137/141000671
> Bouchet-Valat, M., & Kamiński, B. (2023). DataFrames.jl: Flexible and Fast Tabular Data in Julia. Journal of Statistical Software, 107(4), 1–32. https://doi.org/10.18637/jss.v107.i04
> Page M J, McKenzie J E, Bossuyt P M, Boutron I, Hoffmann T C, Mulrow C D et al. (2021). The PRISMA 2020 statement: An updated guideline for reporting systematic reviews. Systematic Reviews, 10(1), 89. https://doi.org/10.1186/s13643-021-01626-4