https://github.com/cellgeni/tracer-utils
This repository contains scripts for running the Teichlab/tracer package.
https://github.com/cellgeni/tracer-utils
Last synced: 4 months ago
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This repository contains scripts for running the Teichlab/tracer package.
- Host: GitHub
- URL: https://github.com/cellgeni/tracer-utils
- Owner: cellgeni
- License: mit
- Created: 2023-05-22T10:51:41.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-09-16T12:19:16.000Z (over 1 year ago)
- Last Synced: 2025-09-09T23:51:39.008Z (9 months ago)
- Language: Shell
- Size: 8.79 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# tracer-utils
### Scripts
This repository contains scripts for running the Teichlab/tracer package.
`bsub-tracer-assemble.sh` - submits tracer assemble to be executed on the farm (do first)
`bsub-tracer-summarise.sh` - submits tracer summarise to be executed on the farm (do second)
### Dockerfile
To build a working singularity image for tracer, ensure your environment has docker and singularity installed. Then do the following:
1) `git clone https://github.com/SimonDMurray/tracer.git` (this pull request is yet to be merged)
2) `cd tracer`
3) `docker build -t tracer:v0.6 .`
4) `sudo singularity build tracer_v0.6.sif docker-daemon://tracer:v0.6`