https://github.com/cfrioux/deadend_detector

Detection of deadends in metabolic networks
https://github.com/cfrioux/deadend_detector

answer-set-programming bioinformatics metabolic-network systems-biology

Last synced: 6 months ago
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Detection of deadends in metabolic networks

• Host: GitHub
• URL: https://github.com/cfrioux/deadend_detector
• Owner: cfrioux
• License: other
• Created: 2019-10-31T11:47:53.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2023-11-02T21:25:15.000Z (over 2 years ago)
• Last Synced: 2025-06-12T20:03:07.053Z (9 months ago)
• Topics: answer-set-programming, bioinformatics, metabolic-network, systems-biology
• Language: Python
• Homepage:
• Size: 20.5 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.rst
  • Changelog: HISTORY.rst
  • Contributing: CONTRIBUTING.rst
  • License: LICENSE
  • Authors: AUTHORS.rst

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README

          
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DeadEnd Detector

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.. image:: https://img.shields.io/pypi/v/deadend_detector.svg

        :target: https://pypi.python.org/pypi/deadend_detector

.. image:: https://img.shields.io/travis/cfrioux/deadend_detector.svg

        :target: https://travis-ci.org/cfrioux/deadend_detector

.. image:: https://readthedocs.org/projects/deadend-detector/badge/?version=latest

        :target: https://deadend-detector.readthedocs.io/en/latest/?badge=latest

        :alt: Documentation Status

.. image:: https://pyup.io/repos/github/cfrioux/deadend_detector/shield.svg

     :target: https://pyup.io/repos/github/cfrioux/deadend_detector/

     :alt: Updates

A logic programming-based detector of dead-end reactions in metabolic networks

* Free software: GNU General Public License v3

* Documentation: https://deadend-detector.readthedocs.io.

Features

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Identifies the deadend metabolites from a metabolic network

* Never consumed metabolites

* Never produced metabolites

Credits

-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter

.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage