https://github.com/cgob/codonDT_snakemake

Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).
https://github.com/cgob/codonDT_snakemake

bioinformatics generalized-linear-models ribosome ribosome-profiling

Last synced: 2 months ago
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Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).

• Host: GitHub
• URL: https://github.com/cgob/codonDT_snakemake
• Owner: cgob
• License: mit
• Created: 2019-08-06T13:58:55.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2023-11-01T12:18:23.000Z (11 months ago)
• Last Synced: 2024-07-01T18:35:03.304Z (3 months ago)
• Topics: bioinformatics, generalized-linear-models, ribosome, ribosome-profiling
• Language: R
• Homepage:
• Size: 1.58 MB
• Stars: 4
• Watchers: 2
• Forks: 3
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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