https://github.com/chfi/gfainject

https://github.com/chfi/gfainject

Last synced: 28 days ago
JSON representation

• Host: GitHub
• URL: https://github.com/chfi/gfainject
• Owner: chfi
• Created: 2022-11-28T16:23:58.000Z (about 2 years ago)
• Default Branch: master
• Last Pushed: 2023-05-10T17:43:33.000Z (over 1 year ago)
• Last Synced: 2024-02-12T15:55:46.461Z (10 months ago)
• Language: Rust
• Size: 27.3 KB
• Stars: 10
• Watchers: 1
• Forks: 4
• Open Issues: 1
• Metadata Files:
  • Readme: readme.md

Awesome Lists containing this project

• awesome-pangenomes - gfainject

README

        

A little tool to map alignments (from a BAM file) to reference paths in a GFA format graph.

Output is a GAF file with one record per alignment, mapping each alignment to a sequence

of steps in the GFA.

The alignment reference names have to match the path names in the GFA.

Usage:

```sh

cargo build --release

./target/release/gfa-injection --gfa some.gfa --bam some.bam

```