https://github.com/chonglc/ngsprint_hackathon-tcga_rshinyapp
https://github.com/chonglc/ngsprint_hackathon-tcga_rshinyapp
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/chonglc/ngsprint_hackathon-tcga_rshinyapp
- Owner: ChongLC
- License: mit
- Created: 2021-09-15T14:26:59.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2022-01-08T17:18:25.000Z (over 3 years ago)
- Last Synced: 2025-01-28T18:15:55.525Z (5 months ago)
- Language: HTML
- Size: 7.84 MB
- Stars: 2
- Watchers: 1
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# NGSprint_Hackathon-TCGA_RShinyApp
## Objective
Develop an interactive application for visualisation on TCGA dataset
## Project goals
Describe TCGA dataset:-
* demographics (age, gender etc.) - who were the patients whose data was analysed?
* survival data - what is the survival of this cancer?
* somatic mutation analysis - what are the most frequently mutated genes? what are the common mutations?
* gene expression - are there clearly visible patterns in gene expression? How does the expression of the highly mutated genes look like?
## Selected cancer type
Head and Neck Squamous Cell Carcinoma (HNSC)
## Application link
## Facilitator
* [Kasia Kedzierska](https://github.com/kzkedzierska), University of Oxford, UK
## Team members
* [Evgenia Chikina](https://github.com/JaneChik), ITMO University, Russia
* [Yin-Cheng Chen](https://github.com/YinchengChen23), Chang Gung University, Taiwan
* [Li Chuin Chong](https://www.linkedin.com/in/lichuinchong/), Bezmialem Vakif University, Turkey
* Yan-Han Fang, National Cheng Kung University, Taiwan
* Shao-Ting Lin, National Cheng Kung University, Taiwan