https://github.com/chrisarg/bio-seqalignment-components-seqmapping

Components for sequence mapping under the Bio::SeqAlignment namespace
https://github.com/chrisarg/bio-seqalignment-components-seqmapping

bioinformatics rna-seq rna-seq-analysis rna-sequencing sequence-alignment

Last synced: 4 months ago
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Components for sequence mapping under the Bio::SeqAlignment namespace

• Host: GitHub
• URL: https://github.com/chrisarg/bio-seqalignment-components-seqmapping
• Owner: chrisarg
• License: other
• Created: 2024-05-09T01:13:25.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-06-24T01:53:16.000Z (about 1 year ago)
• Last Synced: 2025-03-25T11:50:21.080Z (4 months ago)
• Topics: bioinformatics, rna-seq, rna-seq-analysis, rna-sequencing, sequence-alignment
• Language: Perl
• Homepage:
• Size: 82 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README
  • Changelog: Changes
  • License: LICENSE

Awesome Lists containing this project

README

        
NAME

    Bio::SeqAlignment::Components::SeqMapping Components relevant to

    sequence mapping

VERSION

    version 0.03

SYNOPSIS

      use Bio::SeqAlignment::Components::SeqMapping;

      use Bio::SeqAlignment::Components::SeqMapping::Mapper;

      use Bio::SeqAlignment::Components::SeqMapping::Dataflow;

      use Bio::SeqAlignment::Components::SeqMapping::Mapper::ComponentName;

      use Bio::SeqAlignment::Components::SeqMapping::Dataflow::ComponentName;

DESCRIPTION

    This module loads all the components relevant to sequence mapping. If

    you don't want to nuke your namespace with all the components, you can

    load them as needed by using the specific component name, e.g.:

      use Bio::SeqAlignment::Components::SeqMapping::Mapper::ComponentName;

      use Bio::SeqAlignment::Components::SeqMapping::Dataflow::ComponentName;

    where ComponentName is the name of the component you need. If you choose

    violence, you can load all the components at once by using:

      use Bio::SeqAlignment::Components::SeqMapping;

    or components from one of the two categories of modules, i.e. Mapper or

    Dataflow:

      use Bio::SeqAlignment::Components::SeqMapping::Mapper;

      use Bio::SeqAlignment::Components::SeqMapping::Dataflow;

COMPONENTS

    Mapper

        This module provides mapping modules for sequences. These modules

        available for loading are detailed in the documentation of the

        module itself.

    Dataflow

        This module provides dataflow modules for sequences. These modules

        available for loading are detailed in the documentation of the

        module itself.

AUTHOR

    Christos Argyropoulos 

COPYRIGHT AND LICENSE

    This software is copyright (c) 2024 by Christos Argyropoulos.

    This is free software; you can redistribute it and/or modify it under

    the same terms as the Perl 5 programming language system itself.