https://github.com/clinical-genomics/cgstats

Models and connecting to clinstatsdb
https://github.com/clinical-genomics/cgstats

Last synced: 6 days ago
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Models and connecting to clinstatsdb

• Host: GitHub
• URL: https://github.com/clinical-genomics/cgstats
• Owner: Clinical-Genomics
• Created: 2015-10-26T12:31:19.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2022-09-08T04:53:47.000Z (over 2 years ago)
• Last Synced: 2023-03-12T06:28:34.289Z (almost 2 years ago)
• Language: Python
• Size: 5.68 MB
• Stars: 0
• Watchers: 9
• Forks: 0
• Open Issues: 8
• Metadata Files:
  • Readme: README.md

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README

        
# CGSTATS [![Build Status][travis-img]][travis-url]

Models and CRUD to cgstats.

## configuration

cgstats has a parameter `--database` that needs to hold a connection string to the database:

```bash

$ cgstats --database mysql+pymysql://user:[email protected]:3306/cgstats

```

## Table description

**supportparams**: holds the data regarding how the demultiplexing was started

**datasource**: holds the data where and when the run was processed

**demux**: holds the basemask and demux datetime

**flowcell**: holds the data about the flowcell and the HiSeq type

**unaligned**: holds the demultiplexing statistics

**sample**: holds the data regarding sample name

**project**: holds the data regarding the project name

**version**: holds the version data of the database itself. Scripts are developed with a certain version of the database in mind and check with each execution if the correct version of the database is being accessed.

**backup**: holds the data regarding backup of a run

**backtape**: holds the backup tape's name

[travis-img]: https://travis-ci.org/Clinical-Genomics/cgstats.svg?branch=master

[travis-url]: https://travis-ci.org/Clinical-Genomics/cgstats