https://github.com/cmdcolin/graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
https://github.com/cmdcolin/graphgenomeviewer
Last synced: about 1 year ago
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Web based viewer for small to medium GFA format files, similar to Bandage
- Host: GitHub
- URL: https://github.com/cmdcolin/graphgenomeviewer
- Owner: cmdcolin
- License: mit
- Created: 2020-07-22T20:28:51.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2025-02-12T13:59:47.000Z (over 1 year ago)
- Last Synced: 2025-04-12T09:54:03.117Z (about 1 year ago)
- Language: TypeScript
- Homepage: https://cmdcolin.github.io/graphgenomeviewer/
- Size: 18.7 MB
- Stars: 11
- Watchers: 1
- Forks: 1
- Open Issues: 9
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# graphgenomeviewer
This repo provides an NPM module https://www.npmjs.com/package/graphgenomeviewer
which is a react component and a demo instance that shows some demo files in a
vite app
See the lib [README](lib/README.md) for details on using the NPM module
## Demo
See https://cmdcolin.github.io/graphgenomeviewer/
## Developing locally
In one shell
```
cd lib
yarn watch
```
In another
```
cd app
yarn start
```
## Deploy lib to NPM
```
cd lib
yarn publish
```
## Deploy app to GitHub pages
```
cd app
yarn deploy
```
## File type support
This app currently supports GFA1 and a subset of GFA2. It does not fully attempt
to resolve the GFA2 edge spec with dovetails, but makes a basic attempt to at
least link the nodes specified by GFA2 edges
## Notes
Project started during BCC2020 pangenome virtual conference CoFest hackathon
team. Thanks to everyone! See [CREDITS](CREDITS.md)