https://github.com/cmdcolin/jbrowse-plugin-biothings-api

JBrowse 2 plugin for biothings.info related things e.g. mygene.info and myvariant.info
https://github.com/cmdcolin/jbrowse-plugin-biothings-api

Last synced: 4 days ago
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JBrowse 2 plugin for biothings.info related things e.g. mygene.info and myvariant.info

• Host: GitHub
• URL: https://github.com/cmdcolin/jbrowse-plugin-biothings-api
• Owner: cmdcolin
• License: apache-2.0
• Created: 2020-12-10T20:34:36.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2024-02-23T22:19:23.000Z (9 months ago)
• Last Synced: 2024-04-15T02:14:35.294Z (7 months ago)
• Language: TypeScript
• Size: 1.4 MB
• Stars: 0
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md

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README

        
# `jbrowse-plugin-biothings`

> Adapts to APIs like mygene.info to get super rich gene annotations

#### Demo

MyGene.info+MyVariant.info hg19

https://jbrowse.org/code/jb2/main/index.html?config=https%3A%2F%2Funpkg.com%2Fjbrowse-plugin-biothings%2Fdist%2Fconfig.json&session=share-NgDOuAfwWy&password=ZPZgJ

#### Using in JBrowse 2

Add to the "plugins" of your JBrowse Web config:

```json

{

  "plugins": [

    {

      "name": "Biothings",

      "url": "https://unpkg.com/jbrowse-plugin-biothings/dist/jbrowse-plugin-biothings.umd.production.min.js"

    }

  ]

}

```

You can download that JS file and re-host it if you want to avoid a CDN

## Modifying the codebase or using in @jbrowse/react-linear-genome-view

See [DEVELOPERS.md](DEVELOPERS.md)

## Screenshot

![](img/1.png)