https://github.com/cnapy-org/efmtool_link

https://github.com/cnapy-org/efmtool_link

bioinformatics computational-biology constraint-based-modeling metabolic-pathways python stoichiometric-modeling

Last synced: 2 months ago
JSON representation

• Host: GitHub
• URL: https://github.com/cnapy-org/efmtool_link
• Owner: cnapy-org
• License: apache-2.0
• Created: 2021-02-05T08:39:45.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2025-03-12T14:53:05.000Z (over 1 year ago)
• Last Synced: 2025-12-18T04:16:57.886Z (6 months ago)
• Topics: bioinformatics, computational-biology, constraint-based-modeling, metabolic-pathways, python, stoichiometric-modeling
• Language: Python
• Size: 5.3 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# efmtool_link

Framework for calling selected functions of efmtool (https://csb.ethz.ch/tools/software/efmtool.html) from Python.

Installation:

Clone the repository, go into the top efmtool_link directory and install into your current Python environment with:

pip install .

Tip: If you use the -e option during installation then updates from a 'git pull' are at once available in your Python envrionment without the need for a reinstallation.

Example:

The efmtool_link.ipynb Jupyter notebook demonstrates some use cases of this package.