https://github.com/cnuahs/snakemake-minimal
A minimal Snakemake pipeline.
https://github.com/cnuahs/snakemake-minimal
snakemake snakemake-pipeline snakemake-pipelines snakemake-workflow snakemake-workflows
Last synced: 11 months ago
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A minimal Snakemake pipeline.
- Host: GitHub
- URL: https://github.com/cnuahs/snakemake-minimal
- Owner: cnuahs
- Created: 2019-09-02T07:04:44.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2019-09-02T07:07:51.000Z (almost 7 years ago)
- Last Synced: 2025-02-22T12:30:41.513Z (over 1 year ago)
- Topics: snakemake, snakemake-pipeline, snakemake-pipelines, snakemake-workflow, snakemake-workflows
- Language: Python
- Size: 1000 Bytes
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# snakemake-minimal
A minimal [Snakemake](https://snakemake.readthedocs.io/en/stable/) pipeline. Clone this repository and add to it to define your analysis pipeline, i.e.,
```bash
git clone https:github.com/cnuahs/snakemake-minimal.git ./my-analysis.git
cd ./my-analysis.git
git remote add origin https://github.com//my-analysis.git
```
**Notes:**
1. You will need Snakemake. I recomend installing via [miniconda](https://conda.io/en/latest/miniconda.html), available for Windows, Mac and Linux.
2. If you're new to Snakemake, check out the [tutorial](https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html).