https://github.com/cobrexa/abstractfbcmodels.jl

General interface for flux-based constrained metabolic models
https://github.com/cobrexa/abstractfbcmodels.jl

file-formats metabolic-models

Last synced: 3 months ago
JSON representation

General interface for flux-based constrained metabolic models

• Host: GitHub
• URL: https://github.com/cobrexa/abstractfbcmodels.jl
• Owner: COBREXA
• License: apache-2.0
• Created: 2023-09-14T12:24:36.000Z (over 1 year ago)
• Default Branch: master
• Last Pushed: 2024-08-20T12:49:24.000Z (9 months ago)
• Last Synced: 2024-08-20T14:22:59.194Z (9 months ago)
• Topics: file-formats, metabolic-models
• Language: Julia
• Homepage:
• Size: 620 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        

# AbstractFBCModels.jl -- Common interface for flux-balanced constrained models

| Build status | Documentation |

|:---:|:---:|

| [![CI](https://github.com/COBREXA/AbstractFBCModels.jl/actions/workflows/ci.yml/badge.svg?branch=master)](https://github.com/COBREXA/AbstractFBCModels.jl/actions/workflows/ci.yml) [![codecov](https://codecov.io/gh/COBREXA/AbstractFBCModels.jl/branch/master/graph/badge.svg?token=A2ui7exGIH)](https://codecov.io/gh/COBREXA/AbstractFBCModels.jl) | [![stable documentation](https://img.shields.io/badge/docs-stable-blue)](https://cobrexa.github.io/AbstractFBCModels.jl/stable) [![dev documentation](https://img.shields.io/badge/docs-dev-cyan)](https://cobrexa.github.io/AbstractFBCModels.jl/dev) |

Package `AbstractFBCModels.jl` defines a set of accessor functions that provide

a generic API for working with the contents of the constraint-based metabolic

(or "Flux-Balanced Constrained" for FBC) models. Packages that work with model

formats may implement the API to transparently expose the contents of the

models in given format to many other packages.

The primary purpose of this is to provide the model data interface for

[COBREXA.jl](https://github.com/LCSB-BioCore/COBREXA.jl) and

[FBCModelTests.jl](https://github.com/LCSB-BioCore/FBCModelTests.jl), but the

functionality is otherwise completely generic and can be used independently of

these packages.

The package is currently quite new, maintained and open for extensions; feel

free to discuss changes and ideas via issues and pull requests.

#### Acknowledgements

`AbstractFBCModels.jl` was developed at the Luxembourg Centre for Systems

Biomedicine of the University of Luxembourg

([uni.lu/lcsb](https://www.uni.lu/lcsb))

and at Institute for Quantitative and Theoretical Biology at Heinrich Heine

University Düsseldorf ([qtb.hhu.de](https://www.qtb.hhu.de/en/)).

The development was supported by European Union's Horizon 2020 Programme under

PerMedCoE project ([permedcoe.eu](https://www.permedcoe.eu/)),

agreement no. 951773.