https://github.com/cobrexa/sbmlfbcmodels.jl

AbstractFBCModel interface for SBML.jl
https://github.com/cobrexa/sbmlfbcmodels.jl

sbml sbml-models

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AbstractFBCModel interface for SBML.jl

• Host: GitHub
• URL: https://github.com/cobrexa/sbmlfbcmodels.jl
• Owner: COBREXA
• License: apache-2.0
• Created: 2023-09-22T08:41:52.000Z (over 1 year ago)
• Default Branch: master
• Last Pushed: 2024-08-25T13:09:22.000Z (9 months ago)
• Last Synced: 2025-02-20T22:29:11.186Z (3 months ago)
• Topics: sbml, sbml-models
• Language: Julia
• Homepage:
• Size: 91.8 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        

# SBMLFBCModels.jl -- Import and export of SBML flux-balanced constrained models

| Build status |

|:---:|

| [![CI](https://github.com/COBREXA/SBMLFBCModels.jl/actions/workflows/ci.yml/badge.svg?branch=master)](https://github.com/COBREXA/SBMLFBCModels.jl/actions/workflows/ci.yml) [![codecov](https://codecov.io/gh/COBREXA/SBMLFBCModels.jl/branch/master/graph/badge.svg?token=A2ui7exGIH)](https://codecov.io/gh/COBREXA/SBMLFBCModels.jl) |

Package `SBMLFBCModels.jl` defines an instance of the `AbstractFBCModel`

interface (from package

[AbstractFBCModels.jl](https://github.com/COBREXA/AbstractFBCModels.jl)) atop

of the SBML Model structure (defined by

[SBML.jl](https://github.com/LCSB-BioCore/SBML.jl)). This allows you to easily

use the SBML models in constraint-based modeling packages, and convert them to

other constraint-based metabolic modeling data formats.

The primary purpose of this is to provide SBML loading functionality for

[COBREXA.jl](https://github.com/LCSB-BioCore/COBREXA.jl) and

[FBCModelTests.jl](https://github.com/LCSB-BioCore/FBCModelTests.jl), but is

otherwise completely generic and can be used independently of these packages.

You should be able to load SBML models via the AbstractFBCModels interface:

```julia

import AbstractFBCModels as M

import SBMLFBCModels

model = M.load("my_model.xml")

```

Documentation of

[AbstractFBCModels.jl](https://github.com/COBREXA/AbstractFBCModels.jl)

provides details on the use of the loaded model.

#### Acknowledgements

`SBMLFBCModels.jl` was developed at the Luxembourg Centre for Systems

Biomedicine of the University of Luxembourg

([uni.lu/lcsb](https://www.uni.lu/lcsb))

and at Institute for Quantitative and Theoretical Biology at Heinrich Heine

University Düsseldorf ([qtb.hhu.de](https://www.qtb.hhu.de/en/)).

The development was supported by European Union's Horizon 2020 Programme under

PerMedCoE project ([permedcoe.eu](https://www.permedcoe.eu/)),

agreement no. 951773.