https://github.com/codecreatede/rust-jellyfish

rust-jellyfish implementation for genome
https://github.com/codecreatede/rust-jellyfish

bioinformatics genome-analysis genome-sequencing jellyfish rust-crate rust-lang rust-library

Last synced: 6 months ago
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rust-jellyfish implementation for genome

• Host: GitHub
• URL: https://github.com/codecreatede/rust-jellyfish
• Owner: codecreatede
• Created: 2024-11-04T13:32:12.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2024-11-04T20:54:02.000Z (11 months ago)
• Last Synced: 2024-11-04T21:34:17.378Z (11 months ago)
• Topics: bioinformatics, genome-analysis, genome-sequencing, jellyfish, rust-crate, rust-lang, rust-library
• Language: Rust
• Homepage:
• Size: 4.22 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# rust-jellyfish

- a rust implementation of the jellyfish for the counts. 

- outputs both the unique counts, all counts. 

- directly plots the histograms from the counts using the rust plotters.

```

Usage: kmerjellyfish  

Arguments:

         please provide the kmer to be searched for the origin

    please provide the path to be searched for the strings containing the kmer

Options:

  -h, --help     Print help

  -V, --version  Print version

```

Gaurav Sablok