https://github.com/codersales/unsupervised-learning-clustering

- tarball handler py ###########/ |||||||||| - shell script3.sh ########## |||||||||||||||||| - Unsupervised learning Clustering kmeans and hierarchical ##### |||||||||||||||| - topics: | 20-topics | may-2023-filtered | may-2023-filtered-2 | may-2023-filtered-3 | filtered-4
https://github.com/codersales/unsupervised-learning-clustering

1st-triple-quarter-2023 2023 291-commits a-top-repo april-2023 clustering code current h1-2023 jupyter machine-learning major over-200-commits python python3 q2-2023 ranked shell tarball unsupervised-learning

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- tarball handler py ###########/ |||||||||| - shell script3.sh ########## |||||||||||||||||| - Unsupervised learning Clustering kmeans and hierarchical ##### |||||||||||||||| - topics: | 20-topics | may-2023-filtered | may-2023-filtered-2 | may-2023-filtered-3 | filtered-4

• Host: GitHub
• URL: https://github.com/codersales/unsupervised-learning-clustering
• Owner: CoderSales
• License: mit
• Created: 2023-04-11T11:02:08.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-01-09T21:18:14.000Z (10 months ago)
• Last Synced: 2024-01-09T22:36:27.060Z (10 months ago)
• Topics: 1st-triple-quarter-2023, 2023, 291-commits, a-top-repo, april-2023, clustering, code, current, h1-2023, jupyter, machine-learning, major, over-200-commits, python, python3, q2-2023, ranked, shell, tarball, unsupervised-learning
• Language: Jupyter Notebook
• Homepage:
• Size: 58.7 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# unsupervised-learning-clustering

## Key elements in this repository:

### Setup:

1. References

2. `script3.sh` - activates virtual environment (or `source scripy3.sh`)

3. `.bashrc` - for virtual environment

    - in .venv folder

4. Python Select Interpreter

5. pip install ipykernel

6. pip install jupyter

7. sh installer.sh

8. python.exe -m pip install --upgrade pip

9. pip install notebook

10. pip install pandas 

11. python -m pip install -U pip

12. python -m pip install -U matplotlib

13. pip install seaborn

14. pip install -U scikit-learn

15. pip install openpyxl

16. pip install nb-black

17. pip install xlwings

18. xlwings addin install

19. pip install natsort

### Save setup

1. pip freeze > requirements.txt

### Load setup

1. pip install -r requirements.txt

### Analysis:

1. notebooks/K-Means.ipynb

2. data/technical_support_data-2.csv

### Tarball Data Extraction:

1. python tarball-handler.py

    #### Add to gitignore:

    ##### 1. custom components

    ##### 1.1 large files

    ##### 1.1.1 tarball

    TCGA-PANCAN-HiSeq-801x20531.tar.gz

    ##### 1.1.2 large data from tarball

    data/gene_data/TCGA-PANCAN-HiSeq-801x20531/TCGA-PANCAN-HiSeq-801x20531/data.csv

    data/gene_data/TCGA-PANCAN-HiSeq-801x20531/TCGA-PANCAN-HiSeq-801x20531/labels.csv

### Note on data files and Large Data sets on GitHub:

Add data in own commit

in case of 50 MB GitHub warning

### update to .gitignore:

```

*.json

!spec/*.json

```

adapted to:

`!*/ProcessedData.xlsx`

[git ignore all files of a certain type, except those in a specific subfolder](https://stackoverflow.com/questions/4621072/git-ignore-all-files-of-a-certain-type-except-those-in-a-specific-subfolder)