https://github.com/combat-tb/neo4j-galaxy-ie

:whale: Neo4j Galaxy IE
https://github.com/combat-tb/neo4j-galaxy-ie

docker galaxy-project neo4j quay

Last synced: 12 days ago
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:whale: Neo4j Galaxy IE

• Host: GitHub
• URL: https://github.com/combat-tb/neo4j-galaxy-ie
• Owner: COMBAT-TB
• Created: 2016-05-18T10:56:09.000Z (over 8 years ago)
• Default Branch: 3.1
• Last Pushed: 2019-10-28T12:24:56.000Z (about 5 years ago)
• Last Synced: 2024-11-08T14:13:46.498Z (2 months ago)
• Topics: docker, galaxy-project, neo4j, quay
• Language: Shell
• Homepage:
• Size: 8.55 MB
• Stars: 0
• Watchers: 2
• Forks: 2
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# Neo4j Galaxy IE

[![Docker Repository on Quay](https://quay.io/repository/sanbi-sa/neo_ie/status "Docker Repository on Quay")](https://quay.io/repository/sanbi-sa/neo_ie)

A modified version of the [Neo4j:3.1.9](https://github.com/neo4j/docker-neo4j) docker image to cater for [Galaxy port mapping](https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/web/base/interactive_environments.py#L381).

## Build and run

### Build the image

```sh

docker build -t quay.io/sanbi-sa/neo_ie:3.1.9.1 .

```

> *OR*

### Pull the image

```sh

docker pull quay.io/sanbi-sa/neo_ie:3.1.9.1

```

### Run the image

```sh

docker run -d \

    -p 7474:7474 \

    -p 7687:7687 \

    -v /tmp/data:/data \

    -e NEO4J_AUTH=none -e USER_UID=$(id -u) -e USER_GID=$(id -g) \

    quay.io/sanbi-sa/neo_ie:3.1.9.1

```

### To disable Bolt

![disable_bolt](/img/disable_bolt.png)

## Galaxy Integration

*Make sure you have nodejs `v0.10.45` and that you can run `node` (you might have to set a symlink)*

### nodejs

```sh

apt-cache policy nodejs

nodejs:

  Installed: 0.10.45-1nodesource1~trusty1

  Candidate: 0.10.45-1nodesource1~trusty1

  Version table:

 *** 0.10.45-1nodesource1~trusty1 0

        500 https://deb.nodesource.com/node/ trusty/main amd64 Packages

        100 /var/lib/dpkg/status

```

```sh

node -v

v0.10.45

```

### Config

Set `interactive_environment_plugins_directory` to `config/plugins/interactive_environments` in `config/galaxy.ini`

Next, [follow](galaxy/README.md) in the `galaxy` folder to get the Neo4j IE installed.

### Proxy setup

Then, [setup](https://docs.galaxyproject.org/en/master/admin/interactive_environments.html#setting-up-the-proxy) your proxy accordingly.

Thanks to [@bgruening](https://github.com/bgruening) and [@erasche](https://github.com/erasche).