https://github.com/cometsong/mbiome_seqrun_qc

List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
https://github.com/cometsong/mbiome_seqrun_qc

16s 16s-rrna flask microbiome mwgs ngs-pipeline python3 qc sequencing

Last synced: 7 months ago
JSON representation

List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.

Host: GitHub
URL: https://github.com/cometsong/mbiome_seqrun_qc
Owner: cometsong
Created: 2018-08-03T18:47:46.000Z (about 7 years ago)
Default Branch: devel
Last Pushed: 2020-11-04T20:55:14.000Z (almost 5 years ago)
Last Synced: 2025-01-21T06:29:01.119Z (9 months ago)
Topics: 16s, 16s-rrna, flask, microbiome, mwgs, ngs-pipeline, python3, qc, sequencing
Language: Python
Homepage:
Size: 2.97 MB
Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

NGS Sequencer Run QC
:microbe: :dna: :mag: :dart: :heavy_check_mark:

### Features

- Shows list of all uploaded sequencer run "names".
- Each run shows (downloadable) CSV files from sequencing core group.
- If one CSV is present, basic details are parsed into JSON file and displayed
in table at top of page.
- Modular display of other QC details, IFF they're uploaded to the run's folder.
- Link to list of FastQC results
- Analysis of FastQC results
- Distribution of reads graph image
- Comparison of sequence assemblies on 'positive control' samples
- Post-analysis read counts after each step in workflow, e.g. assembly, dechimera, ...

---

### Sequencer Run QC Screenshots

> **List of Run QC pages**

>

>
> **Base Page of Sequencer Run**

>

>
> **Run QC page with Read Distributions**

>

>
> **Run QC page with 16S Read Counts**

>

>
> **Run QC page with Control Assembly Comparison**

>