https://github.com/compomics/ms-lims
Mass spectrometry based proteomics information management system.
https://github.com/compomics/ms-lims
Last synced: about 2 months ago
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Mass spectrometry based proteomics information management system.
- Host: GitHub
- URL: https://github.com/compomics/ms-lims
- Owner: CompOmics
- Created: 2015-04-15T07:46:30.000Z (almost 11 years ago)
- Default Branch: master
- Last Pushed: 2022-06-21T00:50:44.000Z (almost 4 years ago)
- Last Synced: 2025-09-10T05:09:49.201Z (7 months ago)
- Language: Java
- Homepage:
- Size: 16.3 MB
- Stars: 2
- Watchers: 14
- Forks: 1
- Open Issues: 6
-
Metadata Files:
- Readme: README.md
- License: LICENSE-2.0.txt
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README
# ms-lims
* [Project Description](#project-description)
* [Downloads](#downloads)
* [Usage](#usage)
* [Related Projects](#related-projects)
* [Project Support](#project-support)
----
## Project Description
The ms_lims project provides a lightweight, portable yet production-grade solution for managing mass spectrometry based proteomics data.
MS-based proteomics produces large amounts of mass spectra that require processing, identification and possibly quantification before interpretation can be undertaken. High-throughput studies require automation of these various steps, and management of the data in association with the results obtained. We here present ms_lims, a freely available, open-source system based on a central database to automate data management and processing in MS-driven proteomics analyses.
### Citation
*Helsens, K., Colaert, N., Barsnes, H., Muth, T., Flikka, K., Staes, A., Timmerman, E., Wortelkamp, S., Sickmann, A., Vandekerckhove, J., et al. (2010). ms_lims, a simple yet powerful open source LIMS for mass spectrometry-driven proteomics. Proteomics epub ([pid: 20058248](http://www.ncbi.nlm.nih.gov/pubmed/20058248)).*
[Go to top of page](#ms-lims)
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## Downloads
Download ms-lims 7.7.7 [here](http://genesis.ugent.be/uvpublicdata/ms-lims/ms-lims-7.7.7.zip).
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## Usage
* The zip file contains the *ms-lims* jar file and all the libraries needed to run the tool. *Double clicking this resulting jar file will start ms-lims.*
* Download the manual [here](http://genesis.ugent.be/uvpublicdata/ms-lims/ms_lims_manual.pdf).
* Download the database schema [here](http://genesis.ugent.be/uvpublicdata/ms-lims/schema_7.6.png).
* Check out the [release notes](https://github.com/compomics/ms-lims/wiki/ReleaseNotes) and [database updates](https://github.com/compomics/ms-lims/wiki/DatabaseUpdates) in the [wiki](https://github.com/compomics/ms-lims/wiki) section.
### Troubleshooting
Please report any issues or requests in the [issues section](https://github.com/compomics/ms-lims/issues). We will attempt to come up with a solution as soon as possible.
[Go to top of page](#ms-lims)
----
## Related Projects
Ms-lims makes use of [compomics-utilities](http://code.google.com/p/compomics-utilities).
You might also find some of the following projects interesting: [Peptizer](http://code.google.com/p/peptizer),
[dbtoolkit](https://github.com/compomics/dbtoolkit),
[ms-lims](http://code.google.com/p/ms-lims),
[Rover](http://code.google.com/p/compomics-rover) and
[PeptideShaker](http://code.google.com/p/peptide-shaker)
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## Project Support
The ms-lims project is grateful for the support by:
| Compomics | VIB | Ghent University|
|:--:|:--:|:--:|
| [](http://www.compomics.com) | [](http://www.vib.be) | [](http://www.ugent.be/en) |
[Go to top of page](#rover)
----
| IntelliJ | Netbeans | Java | Maven |
|:--:|:--:|:--:|:--:|
| [](https://www.jetbrains.com/idea/) | [](https://netbeans.org/) | [](http://java.com/en/) | [](http://maven.apache.org/) |
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