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https://github.com/comprna/RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
https://github.com/comprna/RATTLE
bioinformatics clustering genomics nanopore rna-seq transcriptome
Last synced: about 1 month ago
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Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
- Host: GitHub
- URL: https://github.com/comprna/RATTLE
- Owner: comprna
- License: gpl-3.0
- Created: 2018-07-13T14:09:34.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2024-02-15T03:50:36.000Z (10 months ago)
- Last Synced: 2024-07-28T19:24:36.711Z (5 months ago)
- Topics: bioinformatics, clustering, genomics, nanopore, rna-seq, transcriptome
- Language: C++
- Homepage:
- Size: 83 MB
- Stars: 56
- Watchers: 8
- Forks: 10
- Open Issues: 18
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Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- awesome-nanopore - RATTLE - [C++] - [RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02715-w) (Software packages / Transcript discovery and quantification)