https://github.com/connectomicslab/cmtklib-data

Datalad dataset that stores all data resources of the cmtklib module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3).
https://github.com/connectomicslab/cmtklib-data

brain data parcellation resources software

Last synced: 11 days ago
JSON representation

Datalad dataset that stores all data resources of the cmtklib module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3).

• Host: GitHub
• URL: https://github.com/connectomicslab/cmtklib-data
• Owner: connectomicslab
• License: cc-by-4.0
• Created: 2021-03-10T09:10:41.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2021-03-10T09:39:06.000Z (almost 5 years ago)
• Last Synced: 2025-09-10T05:32:01.036Z (5 months ago)
• Topics: brain, data, parcellation, resources, software
• Language: Python
• Homepage:
• Size: 240 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Zenodo: .zenodo.json

Awesome Lists containing this project

README

          
# Connectome Mapping TooKit LIBrary (CMTKLIB) Data Resources

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4593025.svg)](https://doi.org/10.5281/zenodo.4593025)

### Overview

Datalad dataset that provides all data resources of the

`cmtklib` module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3).

* `colortable_and_gcs` stores all data resources (gcs atlas files and colortable) for Lausanne 2008 parcellation

* `diffusion` stores gradient tables and ODF direction files used by CMP2

* `parcellation` contains all GRAPHML and Freesurfer Color LUT for Native Freesurfer, Lausanne 2008 and Lausanne 2018

  parcellations, with additional annot files for Lausanne 2018

* `segmentation` provides templates for brain extraction (ANTS template IXI and ANTS MICCAI2012 multi-atlas challenge)

  and for thalamic nuclei segmentation

Git-annexed data are hosted @ https://osf.io/5hy42/.

 

### Funding

Work supported by the [Sinergia SNFNS-170873 Grant](http://p3.snf.ch/Project-170873).

### Citing

CMTKLIB-data is published to Zenodo. If you use CMTKLIB-data in your work, please acknowledge it with the following citation:

> Tourbier, S., Aleman-Gomez, Y., Mullier, Emeline, Griffa, A., Bach Cuadra, M., & Hagmann, P.. (2021). connectomicslab/CMTKLIB-data: CMTKLIB-data v1.X (Version v1.X) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.4593025

### License

This dataset is licensed under CC BY 4.0. See [license](LICENSE) for more details.

All trademarks referenced herein are property of their respective holders.

Copyright (C) 2009-2021, Hospital Center and University of Lausanne (UNIL-CHUV),

Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland & Contributors.