https://github.com/conorheffron/cbio-skin-canc

Skin Cancer Dataset Analysis
https://github.com/conorheffron/cbio-skin-canc

covr dplyr ggplot2 health knitr plotly r-programming testthat tidyverse

Last synced: about 21 hours ago
JSON representation

Skin Cancer Dataset Analysis

• Host: GitHub
• URL: https://github.com/conorheffron/cbio-skin-canc
• Owner: conorheffron
• License: gpl-3.0
• Created: 2023-12-28T02:14:03.000Z (9 months ago)
• Default Branch: main
• Last Pushed: 2024-07-25T23:10:15.000Z (2 months ago)
• Last Synced: 2024-07-26T20:40:52.172Z (2 months ago)
• Topics: covr, dplyr, ggplot2, health, knitr, plotly, r-programming, testthat, tidyverse
• Language: R
• Homepage: https://conorheffron.github.io/cbio-skin-canc/
• Size: 12.8 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Security: SECURITY.md

Awesome Lists containing this project

README

        
![Proof HTML](https://github.com/conorheffron/cbio-skin-canc/actions/workflows/proof-html.yml/badge.svg)

# cbio-skin-canc

### Summary

- The dataset I have selected for this assignment is from the CBio Portal for Cancer Genomics website.

- The full data set is in tar / gzip format that can be downloaded directly from https://www.cbioportal.org/study/summary?id=mel_mskimpact_2020.

- I will focus on the clinical data files (data_clinical_patient.txt, data_clinical_sample.txt, and data_mutations.txt), primarily the clinical patient file. These are tab delimited plain text files that can be accessed after the tar is decompressed.

- There is a mix of categorical (factors), continuous and numerical features (some to be inferred by R code).

- This data represents the targeted sequencing (MSK-IMPACT) of 696 melanoma tumour / normal pairs.

- There is a corresponding published medical journal entitled “Therapeutic Implications of Detecting MAPK-Activating Alterations in Cutaneous and Unknown Primary Melanomas”.

**Run All Code Chunks in _`final-project-report.qmd`_ from RStudio project & render to HTML or PDF**

- See skin cancer dataset analysis in full HTML report format at: [Full Report](https://conorheffron.github.io/cbio-skin-canc/final-project-report.html)