https://github.com/constantinpape/skeletor

Tools and wrappers for skeletonization.
https://github.com/constantinpape/skeletor

connectomics skeletonization teasar

Last synced: 15 days ago
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Tools and wrappers for skeletonization.

• Host: GitHub
• URL: https://github.com/constantinpape/skeletor
• Owner: constantinpape
• License: mit
• Created: 2019-04-18T22:30:54.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2019-06-18T20:46:51.000Z (over 5 years ago)
• Last Synced: 2024-10-19T00:20:25.199Z (about 1 month ago)
• Topics: connectomics, skeletonization, teasar
• Language: Python
• Homepage:
• Size: 35.2 KB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Skeletor

Tools and wrappers for skeletonization. This is work-in-progress.

## Functionality

Skeletonization wrappers:

- [Thinning-based](http://155.98.16.52/devbuilds/biomesh3d/FEMesher/references/lee94-3dskeleton.pdf), uses the implementation of [skimage](https://scikit-image.org/docs/dev/api/skimage.morphology.html#skeletonize-3d).

- [Teasar](https://www3.cs.stonybrook.edu/~bender/pub/PG2000_teasar.pdf), TODO.

Merging skeletons:

- TODO

IO:

- swc

- nml / nmx

- custom n5 format

## Installation

## Usage