https://github.com/coongroup/IPSA

The Interactive Peptide Spectral Annotator
https://github.com/coongroup/IPSA

Last synced: 1 day ago
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The Interactive Peptide Spectral Annotator

• Host: GitHub
• URL: https://github.com/coongroup/IPSA
• Owner: coongroup
• License: mit
• Created: 2018-11-15T16:18:45.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2020-06-09T15:20:15.000Z (over 4 years ago)
• Last Synced: 2024-08-02T13:31:53.013Z (3 months ago)
• Language: JavaScript
• Size: 11.8 MB
• Stars: 16
• Watchers: 8
• Forks: 9
• Open Issues: 4
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-proteomics - IPSC - Interactive Peptide Spectrum Annotator, web based utility for shotgun mass spectrum annotation - [paper](https://www.mcponline.org/article/S1535-9476(20)32771-7/fulltext) (Miscellaneous / Table of Contents)

README

        
# Welcome to IPSA



    



The **I**​nteractive **P**​eptide **S**​pectrum **A**​nnotator, or IPSA for short, is a web-based utility for the annotation of shotgun proteomics mass spectrometry data. IPSA generates interactive visualizations from peptide spectra collected from standard bottom-up proteomic workflows. These visualizations can be exported in SVG format to be used in figure generation or to be shared with collaborators. Additionally, annotated fragment ions and additional metrics can be exported in CSV format for instrument performance evaluation.

IPSA can be accessed by navigating to http://www.interactivepeptidespectralannotator.com

The wiki links below contain instructions on how to use IPSA to:

* [Annotate individual peptide spectra](https://github.com/coongroup/IPSA/wiki/Single-Spectrum-Annotation)

* [Upload multiple peptide identifications and spectra](https://github.com/coongroup/IPSA/wiki/Data-Upload)

* [Analyze previously uploaded identifications](https://github.com/coongroup/IPSA/wiki/Analyze-Uploaded-Identifications)

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* [Local install using Docker](https://github.com/coongroup/IPSA/wiki/Docker)

* [Local server implementation](https://github.com/coongroup/IPSA/wiki/Private-Hosting)

* [IPSA directive](https://github.com/coongroup/IPSA/wiki/IPSA-Directive)

Please select one of the above links or refer to the Wiki tab to select your desired guide.